DNA Binding Motif

Accessions: MA1344.1 (JASPAR 2018), M0220 (AthalianaCistrome v4_May2016)
Names: bZIP28, bZIP28.DAP, T14739;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1, AthalianaCistrome v4_May2016 2
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: dwwgrtsACGTGKCa
Weblogo:
PSSM: P0 A C G T
01 177 65 147 159 d
02 172 108 103 165 w
03 138 90 91 229 w
04 125 39 254 130 g
05 249 69 174 56 r
06 127 79 3 339 t
07 1 181 315 51 s
08 546 0 2 0 A
09 0 544 0 4 C
10 4 0 544 0 G
11 0 0 0 548 T
12 6 0 542 0 G
13 0 0 407 141 K
14 89 431 1 27 C
15 302 42 118 86 a
Binding TFs: T14739 / Q9SG86 (Basic region leucine zipper, bZIP transcription factor)
Binding Sites: MA1344.1.10
MA1344.1.11 / MA1344.1.4
MA1344.1.3
MA1344.1.7
MA1344.1.5
MA1344.1.1
MA1344.1.12
MA1344.1.19 / MA1344.1.13
MA1344.1.14
MA1344.1.15
MA1344.1.16
MA1344.1.17
MA1344.1.18
MA1344.1.2
MA1344.1.20
MA1344.1.6
MA1344.1.8
MA1344.1.9
Publications: Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

Disclaimer

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