DNA Binding Motif

Accessions: 1je8_F (3D-footprint 2022-04-03)
Names: Nitrate/Nitrite Response Regulator Protein NARL
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site
Length: 6
Consensus: TnGGtA
Weblogo:
PSSM: P0 A C G T
01 0 0 20 76 T
02 24 24 24 24 n
03 0 0 96 0 G
04 0 0 96 0 G
05 19 19 20 38 t
06 96 0 0 0 A
Binding TFs: 1je8_F (Bacterial regulatory proteins, luxR family, Sigma-70, region 4, Sigma-70, region 4, Winged helix-turn-helix DNA-binding)
Binding Sites: 1je8_G / 1je8_H
Publications: Maris AE., Sawaya MR., Kaczor-Grzeskowiak M., Jarvis MR., Bearson SM., Kopka ML., Schroder I., Gunsalus RP., Dickerson RE. Dimerization allows DNA target site recognition by the NarL response regulator. Nat Struct Biol. 9(10):771-8 (2002). [Pubmed]

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