DNA Binding Motif

Accessions: 6e33_A (3D-footprint 2022-04-03)
Names: Uncharacterized transcriptional regulatory protein C27B12.11c
Organisms: Schizosaccharomyces pombe, Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of Pho7-DNA complex
Length: 13
Consensus: TTCGGACnnTCAA
Weblogo:
PSSM: P0 A C G T
01 5 5 5 81 T
02 11 7 5 73 T
03 0 96 0 0 C
04 0 0 96 0 G
05 0 0 96 0 G
06 90 0 6 0 A
07 5 81 5 5 C
08 24 24 24 24 n
09 24 24 24 24 n
10 0 6 0 90 T
11 0 96 0 0 C
12 90 5 1 0 A
13 79 5 5 7 A
Binding TFs: 6e33_A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
Binding Sites: 6e33_B
6e33_C
Publications: Garg A, Goldgur Y, Schwer B, Shuman S. Distinctive structural basis for DNA recognition by the fission yeast Zn2Cys6 transcription factor Pho7 and its role in phosphate homeostasis. Nucleic Acids Res 46:11262-11273 (2018). [Pubmed]

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