DNA Binding Motif

Accessions: 1d5y_CD (3D-footprint 20231221)
Names: ROB TRANSCRIPTION FACTOR
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX WITH DNA
Length: 6
Consensus: caGCAC
Weblogo:
PSSM: P0 A C G T
01 15 49 17 15 c
02 31 21 23 21 a
03 4 4 81 7 G
04 0 96 0 0 C
05 67 9 9 11 A
06 9 67 9 11 C
Binding TFs: 1d5y_C / 1d5y_D (Bacterial regulatory helix-turn-helix proteins, AraC family, GyrI-like small molecule binding domain, Helix-turn-helix domain)
Binding Sites: 1d5y_O
1d5y_P
Publications: Kwon HJ., Bennik MH., Demple B., Ellenberger T. Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA. Nat Struct Biol. 7(5):424-30 (2000). [Pubmed]

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