DNA Binding Motif

						

			
Accessions: 1ais_A (3D-footprint 20231221)

			
Names: PROTEIN (TATA-BINDING PROTEIN)
Organisms: Pyrococcus woesei
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI
Length: 8
Consensus: TTTTTAAA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      9     11     76      T
02      0      0      0     96      T
03      0      0      0     96      T
04      0      0      0     96      T
05      0     10      0     86      T
06     67      9     11      9      A
07     96      0      0      0      A
08     67     11      9      9      A
Binding TFs: 1ais_A (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1ais_C
1ais_E
			
Publications: Kosa P.F, Ghosh G, DeDecker B.S, Sigler P.B. The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box. Proceedings of the National Academy of Sciences of the United States of America 94:6042-7 (1997). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.