DNA Binding Motif

						

			
Accessions: BCL6B_DBD (HumanTF 1.0), MA0731.1 (JASPAR 2024)

			
Names: BCL6B
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1, JASPAR 2024 2
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: Site type: monomeric; SELEX cycle: 4, HT-SELEX
Length: 17
Consensus: TGCTTTCTAGGAATTmm
Weblogo: 
PSSM: P0      A      C      G      T
01      0     19      0    207      T
02      3      0    186      1      G
03      0    367      0      2      C
04      0      0      0    212      T
05      0      0      0    213      T
06      0      0      2    212      T
07      0    384      0      0      C
08      0     12     34    214      T
09    280      0      0      0      A
10      0      0    173      0      G
11      0      0    171      0      G
12    289      0      2      0      A
13    290      0      0      0      A
14      0      2      0    215      T
15      0     16      0    211      T
16    113    243      9      0      m
17    183    146      7      0      m
Type: Heterodimer
Binding TFs: BCL6B_DBD (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
A8KA13 (Zinc finger, C2H2 type, BTB/POZ domain, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
A8KA13
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]


Hartatik T, Okada S, Okabe S, Arima M, Hatano M, Tokuhisa T. Binding of BAZF and Bc16 to STAT6-binding DNA sequences. Biochem Biophys Res Commun 284:26-32 (2001). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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