DNA Binding Motif

Accessions: MA0548.2 (JASPAR 2018), M0481 (AthalianaCistrome v4_May2016)
Names: AGL15, AGL15.DAP, T23985;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1, AthalianaCistrome v4_May2016 2
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 19
Consensus: cTTTCYwtWTTkGGwAAsw
Weblogo:
PSSM: P0 A C G T
01 133 218 137 111 c
02 48 33 5 513 T
03 16 5 3 575 T
04 84 8 21 486 T
05 0 596 0 3 C
06 0 435 0 164 Y
07 200 80 50 269 w
08 88 85 53 373 t
09 162 0 4 433 W
10 7 8 0 584 T
11 89 45 31 434 T
12 138 42 168 251 k
13 125 1 473 0 G
14 0 0 585 14 G
15 325 50 28 196 w
16 543 13 5 38 A
17 475 7 29 88 A
18 113 175 185 126 s
19 157 77 50 315 w
Binding TFs: Q38847 / T23985 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Binding Sites: MA0548.2.1
MA0548.2.10
MA0548.2.11
MA0548.2.12
MA0548.2.13
MA0548.2.14
MA0548.2.15
MA0548.2.16
MA0548.2.17
MA0548.2.18
MA0548.2.19
MA0548.2.2
MA0548.2.20
MA0548.2.3
MA0548.2.4 / MA0548.2.5
MA0548.2.6
MA0548.2.7
MA0548.2.8
MA0548.2.9
Publications: Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

Disclaimer

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