DNA Binding Motif

Accessions: MA0548.2 (JASPAR 2018)
Names: AGL15
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 [Pubmed]
Notes: DAP-seq
Length: 19
Consensus: cTTTCYwtWTTkGGwAAsw
Weblogo:
PSSM: P0 A C G T
01 133 218 137 111 c
02 48 33 5 513 T
03 16 5 3 575 T
04 84 8 21 486 T
05 0 596 0 3 C
06 0 435 0 164 Y
07 200 80 50 269 w
08 88 85 53 373 t
09 162 0 4 433 W
10 7 8 0 584 T
11 89 45 31 434 T
12 138 42 168 251 k
13 125 1 473 0 G
14 0 0 585 14 G
15 325 50 28 196 w
16 543 13 5 38 A
17 475 7 29 88 A
18 113 175 185 126 s
19 157 77 50 315 w
Binding TFs: Q38847 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Binding Sites: MA0548.2.1
MA0548.2.10
MA0548.2.11
MA0548.2.12
MA0548.2.13
MA0548.2.14
MA0548.2.15
MA0548.2.16
MA0548.2.17
MA0548.2.18
MA0548.2.19
MA0548.2.2
MA0548.2.20
MA0548.2.3
MA0548.2.4 / MA0548.2.5
MA0548.2.6
MA0548.2.7
MA0548.2.8
MA0548.2.9
Publications: Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.