DNA Binding Motif

Accessions: 1kb2_B (3D-footprint 2022-04-03)
Names: Vitamin D3 Receptor
Organisms: Homo sapiens
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin (SPP) Response Element
Length: 5
Consensus: GTTCA
Weblogo:
PSSM: P0 A C G T
01 7 7 73 9 G
02 0 0 0 96 T
03 9 7 7 73 T
04 7 73 9 7 C
05 73 9 7 7 A
Binding TFs: 1kb2_B (Zinc finger, C4 type (two domains))
Binding Sites: 1kb2_C
1kb2_D
Publications: Shaffer P.L, Gewirth D.T. Structural basis of VDR-DNA interactions on direct repeat response elements. The EMBO journal 21:2242-52 (2002). [Pubmed]

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