DNA Binding Motif

Accessions: MA0195.1 (JASPAR 2018)
Names: Lim3
Organisms: Drosophila melanogaster
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: bacterial 1-hybrid
Length: 7
Consensus: yTAATTA
Weblogo:
PSSM: P0 A C G T
01 3 7 2 8 y
02 4 0 0 16 T
03 16 0 3 1 A
04 20 0 0 0 A
05 0 0 0 20 T
06 0 2 4 14 T
07 16 0 4 0 A
Binding TFs: Q9VJ02 (LIM domain, Homeobox domain, Homeobox KN domain)
Binding Sites: MA0195.1.18
MA0195.1.1
MA0195.1.10
MA0195.1.11
MA0195.1.12
MA0195.1.13
MA0195.1.14
MA0195.1.15
MA0195.1.16
MA0195.1.17
MA0195.1.19
MA0195.1.2
MA0195.1.20
MA0195.1.3
MA0195.1.4
MA0195.1.5
MA0195.1.6
MA0195.1.7
MA0195.1.8
MA0195.1.9
Publications: Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed]

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