DNA Binding Motif

Accessions: MA1252.1 (JASPAR 2024), M0119 (AthalianaCistrome v4_May2016)
Names: ERF086, PUCHI, PUCHI.DAP, T21941;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: ccdyCkCCGCCGyyd
Weblogo:
PSSM: P0 A C G T
01 86 245 46 101 c
02 84 255 26 113 c
03 148 42 150 138 d
04 61 254 37 126 y
05 39 397 0 42 C
06 59 0 256 163 k
07 0 397 61 20 C
08 1 477 0 0 C
09 8 0 469 1 G
10 2 466 1 9 C
11 3 475 0 0 C
12 13 0 459 6 G
13 8 260 11 199 y
14 104 214 34 126 y
15 194 37 123 124 d
Type: Heterodimer
Binding TFs: Q6J9Q2 / T21941 (AP2 domain)
Q6J9Q2
Publications: Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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