DNA Binding Motif

						

			
Accessions: MA0413.1 (JASPAR 2024)

			
Names: USV1
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 20
Consensus: dwwttmCCCCTGAAyttkks
Weblogo: 
PSSM: P0      A      C      G      T
01    269    223    250    255      d
02    306    182    216    294      w
03    342    168    206    283      w
04    131    193    146    528      t
05    133     55    157    652      t
06    318    551    101     28      m
07      1    967     26      3      C
08      0    977      0     20      C
09      3    993      1      1      C
10      1    981      0     16      C
11      0      6      3    989      T
12      0      2    869    126      G
13    956      0     36      5      A
14    850     92     21     35      A
15    174    257    162    405      y
16    233    235     93    438      t
17    212    191    197    399      t
18    181    185    321    311      k
19    205    100    265    428      k
20    219    297    365    116      s
Type: Heterodimer
Binding TFs: Q12132 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Q12132
			
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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