DNA Binding Motif

						

			
Accessions: MA0080.3 (JASPAR 2024)

			
Names: Spi1
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 15
Consensus: rraaagAGGAAGTGr
Weblogo: 
PSSM: P0      A      C      G      T
01  24957  10470  17557  10731      r
02  27071   7875  22021   6748      r
03  38966   3311  13786   7652      a
04  42251   3103  12032   6329      a
05  38682    534  11483  13016      a
06  12577   8120  43018      0      g
07  45356   3209  14683    467      A
08   4801      0  58914      0      G
09      0      0  63715      0      G
10  63665      0     50      0      A
11  63715      0      0      0      A
12   3436  10145  50134      0      G
13   8250   3223   3385  48857      T
14   3893  12038  45501   2283      G
15  21911  12028  21003   8773      r
Type: Heterodimer
Binding TFs: P17433 (Ets-domain)
P17433
Binding Sites: MA0080.3.1
MA0080.3.10
MA0080.3.11
MA0080.3.12
MA0080.3.13
MA0080.3.14
MA0080.3.15
MA0080.3.16
MA0080.3.17
MA0080.3.18
MA0080.3.19
MA0080.3.2
MA0080.3.20
MA0080.3.3
MA0080.3.4
MA0080.3.5
MA0080.3.6
MA0080.3.7
MA0080.3.8
MA0080.3.9
			
Publications: Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson M.I, Ticoll A, Snoddy J, Wasserman W.W. PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation. Genome biology 8:R207 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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