DNA Binding Motif

Accessions: 1rpe_LR (3D-footprint 20231221)
Names: PROTEIN (434 REPRESSOR)
Organisms: Phage 434
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION
Length: 16
Consensus: AAmAAgnnnnATTGTA
Weblogo:
PSSM: P0 A C G T
01 96 0 0 0 A
02 96 0 0 0 A
03 52 28 4 12 m
04 96 0 0 0 A
05 96 0 0 0 A
06 9 14 62 11 g
07 24 24 24 24 n
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 78 9 9 0 A
12 0 0 0 96 T
13 0 0 0 96 T
14 4 9 81 2 G
15 0 0 0 96 T
16 81 4 4 7 A
Binding TFs: 1rpe_L / 1rpe_R (Helix-turn-helix, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: 1rpe_A
1rpe_B
Publications: Shimon L.J, Harrison S.C. The phage 434 OR2/R1-69 complex at 2.5 A resolution. Journal of molecular biology 232:826-38 (1993). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.