DNA Binding Motif

Accessions: Mta (DBTBS 1.0)
Names: Mta
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Length: 14
Consensus: GACyCTmCssTWGs
Weblogo:
PSSM: P0 A C G T
01 0 0 1 0 G
02 1 0 0 0 A
03 0 1 0 0 C
04 0 0.47 0 0.53 y
05 0.21 0.79 0 0 C
06 0 0 0 1 T
07 0.53 0.47 0 0 m
08 0.21 0.79 0 0 C
09 0 0.66 0.34 0 s
10 0 0.34 0.66 0 s
11 0 0 0 1 T
12 0.69 0 0 0.31 W
13 0.21 0 0.79 0 G
14 0 0.66 0.34 0 s
Binding TFs: Mta (MerR family regulatory protein, TipAS antibiotic-recognition domain, MerR, DNA binding, MerR HTH family regulatory protein)
Binding Sites: blt_2
bmr_2
mta_1
Publications: Baranova N.N, Danchin A, Neyfakh A.A. Mta, a global MerR-type regulator of the Bacillus subtilis multidrug-efflux transporters. Molecular microbiology 31:1549-59 (1999). [Pubmed]

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