DNA Binding Motif

						

			
Accessions: ZNF238_full (HumanTF 1.0), MA0698.1 (JASPAR 2024)

			
Names: ZNF238, ZBTB18
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1, JASPAR 2024 2
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: Site type: monomeric; SELEX cycle: 3, HT-SELEX
Length: 13
Consensus: hatCCAGATGTkb
Weblogo: 
PSSM: P0      A      C      G      T
01   3561   4188   2499   3423      h
02   7064    753   2535   3319      a
03   1177   1937   5212  13670      t
04   3618  13670   1899     60      C
05     21  13670      3      8      C
06  13670      5     33    206      A
07      3    245  13670      6      G
08  13670   1048    278    297      A
09     14     15     94  13670      T
10      3      1  13670      1      G
11     48    314     36  13670      T
12    210    177   5530   8140      k
13   1725   4042   3876   4027      b
Type: Heterodimer
Binding TFs: Q99592 (Zinc finger, C2H2 type, BTB/POZ domain, Zinc-finger double domain, C2H2-type zinc finger)
ZNF238_full (Zinc finger, C2H2 type, BTB/POZ domain, Zinc-finger double domain, C2H2-type zinc finger)
Q99592
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]


Aoki K., Meng G., Suzuki K., Takashi T., Kameoka Y., Nakahara K., Ishida R., Kasai M. RP58 associates with condensed chromatin and mediates a sequence-specific transcriptional repression.. J. Biol. Chem. 273:26698-26704 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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