DNA Binding Motif

Accessions: 1nh2_AC (3D-footprint 20231221)
Names: Transcription initiation factor TFIID
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of a yeast TFIIA/TBP/DNA complex
Length: 8
Consensus: TAnAAaAc
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 96 0 0 0 A
03 24 24 24 24 n
04 96 0 0 0 A
05 96 0 0 0 A
06 54 13 13 16 a
07 96 0 0 0 A
08 13 57 13 13 c
Binding TFs: 1nh2_A (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1nh2_F
1nh2_E
Publications: Bleichenbacher M, Tan S, Richmond T.J. Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes. Journal of molecular biology 332:783-93 (2003). [Pubmed]

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