DNA Binding Motif

Accessions: MA0521.1 (JASPAR 2024)
Names: Tcf12
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: rRCAGCTGswg
Weblogo:
PSSM: P0 A C G T
01 6170 1585 5123 17 r
02 8820 124 3951 0 R
03 0 12895 0 0 C
04 12895 0 0 0 A
05 8 0 12887 0 G
06 184 10822 1889 0 C
07 0 0 0 12895 T
08 0 0 12895 0 G
09 1875 5527 3811 1682 s
10 3912 2416 2925 3642 w
11 2863 3005 4836 2191 g
Type: Heterodimer
Binding TFs: Q61286 (Helix-loop-helix DNA-binding domain)
Q61286
Binding Sites: MA0521.1.16
MA0521.1.17
MA0521.1.2
MA0521.1.3
MA0521.1.4
MA0521.1.5
MA0521.1.15
MA0521.1.1
MA0521.1.10
MA0521.1.11
MA0521.1.12
MA0521.1.13
MA0521.1.14
MA0521.1.18
MA0521.1.19
MA0521.1.20
MA0521.1.6
MA0521.1.7
MA0521.1.8
MA0521.1.9
Publications: Zhang Y, Doyle K, Bina M. Interactions of HTF4 with E-box motifs in the long terminal repeat of human immunodeficiency virus type 1. Journal of virology 66:5631-4 (1992). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.