DNA Binding Motif

						

			
Accessions: MA0499.1 (JASPAR 2024)

			
Names: Myod1
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 13
Consensus: wsCASCTGyycyy
Weblogo: 
PSSM: P0      A      C      G      T
01   6862   5589   5003   7060      w
02   4142   6513  11000   2859      s
03      0  24514      0      0      C
04  24353      0      0    161      A
05      0   6423  18072     19      S
06      0  24514      0      0      C
07      0      0      0  24514      T
08      0      0  24514      0      G
09      9   9087    654  14764      y
10     16  11010   2905  10583      y
11   5861   7591   5945   5117      c
12   1913  11622   4319   6660      y
13   4129   7657   4423   8305      y
Type: Heterodimer
Binding TFs: P10085 (Helix-loop-helix DNA-binding domain, Myogenic Basic domain, Myogenic determination factor 5)
P10085
Binding Sites: MA0499.1.1
MA0499.1.10
MA0499.1.11
MA0499.1.12
MA0499.1.13
MA0499.1.14
MA0499.1.15
MA0499.1.16
MA0499.1.17
MA0499.1.18
MA0499.1.19
MA0499.1.2
MA0499.1.20
MA0499.1.3
MA0499.1.4
MA0499.1.5
MA0499.1.6
MA0499.1.7
MA0499.1.8
MA0499.1.9
			
Publications: Cao Y, Yao Z, Sarkar D, Lawrence M, Sanchez G.J, Parker M.H, MacQuarrie K.L, Davison J, Morgan M.T, Ruzzo W.L, Gentleman R.C, Tapscott S.J. Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming. Developmental cell 18:662-74 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.