DNA Binding Motif

Accessions: UP00518A_2 (UniPROBE 20160601)
Names: A.nid Fox4, ANID_04521, fhpA
Organisms: Emericella nidulans
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: grsmyawGTTTTACAcgwkmgw
Weblogo:
PSSM: P0 A C G T
01 0.22 0.20 0.35 0.23 g
02 0.37 0.14 0.28 0.20 r
03 0.12 0.40 0.34 0.15 s
04 0.44 0.26 0.17 0.14 m
05 0.09 0.26 0.08 0.57 y
06 0.55 0.15 0.20 0.10 a
07 0.30 0.11 0.05 0.54 w
08 0.01 0 0.99 0 G
09 0.01 0.01 0 0.97 T
10 0 0 0 0.99 T
11 0.18 0 0.01 0.81 T
12 0 0 0.03 0.97 T
13 0.98 0 0.01 0 A
14 0 0.99 0 0.01 C
15 0.76 0.12 0.05 0.07 A
16 0.21 0.42 0.13 0.25 c
17 0.16 0.14 0.62 0.08 g
18 0.35 0.18 0.21 0.27 w
19 0.11 0.20 0.39 0.29 k
20 0.25 0.50 0.07 0.18 m
21 0.18 0.20 0.42 0.20 g
22 0.30 0.13 0.16 0.41 w
Binding TFs: UP00518A (Fork head domain)
Binding Sites: AACAAACA
ACAAACAA
ATTGTTTG
CAAACAAA
GCAAACAA
AAGCAAAC
AAGTTTGC
ACAAACAC
ACAAACAT
AGCAAACA
AGGCAAAC
ATCAAACA
ATGTTTGC
CAAACATC
CGCAAACA
GACAAACA
GCAAACAC
GGCAAACA
GTCAAACA
GTTTGCTA
Publications: Nakagawa S, Gisselbrecht SS, Rogers JM, Hartl DL, Bulyk ML. DNA-binding specificity changes in the evolution of forkhead transcription factors. Proc Natl Acad Sci U S A 110:12349-54 (2013). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.