DNA Binding Motif

Accessions: 4ihs_B (3D-footprint 20231221)
Names: HTH-type transcriptional regulator BenM
Organisms: Acinetobacter baylyi, strain ATCC 33305 / BD413 / ADP1
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of BenM_DBD/catB site 1 DNA Complex
Length: 9
Consensus: GGTATATAA
Weblogo:
PSSM: P0 A C G T
01 7 5 79 5 G
02 0 0 96 0 G
03 0 0 0 96 T
04 73 7 11 5 A
05 0 0 0 96 T
06 79 5 7 5 A
07 5 5 11 75 T
08 96 0 0 0 A
09 81 5 5 5 A
Binding TFs: 4ihs_B (Bacterial regulatory helix-turn-helix protein, lysR family)
Binding Sites: 4ihs_E
4ihs_F
Publications: Alanazi AM, Neidle EL, Momany C. The DNA-binding domain of BenM reveals the structural basis for the recognition of a T-N11-A sequence motif by LysR-type transcriptional regulators. Acta Crystallogr D Biol Crystallogr : (2013). [Pubmed]

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