DNA Binding Motif

						

			
Accessions: MA0308.1 (JASPAR 2024)

			
Names: GSM1
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 21
Consensus: wtyaarwAwCTCCGGArtwkw
Weblogo: 
PSSM: P0      A      C      G      T
01    322    207    190    279      w
02    160    172    229    438      t
03    219    289    168    322      y
04    461    124    184    229      a
05    349    201    233    216      a
06    342    144    281    231      r
07    566     22     17    393      w
08    849      9     20    120      A
09    400    164    182    252      w
10      3    916     10     69      C
11      4    177     38    778      T
12      3    985      1      9      C
13      0    972     25      0      C
14      0     30    967      1      G
15    136      4    849      9      G
16    708     60    197     32      A
17    289    183    438     87      r
18    164    172    205    458      t
19    373    101    232    292      w
20    225    168    299    306      k
21    322    212    195    268      w
Type: Heterodimer
Binding TFs: P42950 (Fungal Zn(2)-Cys(6) binuclear cluster domain)
P42950
			
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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