DNA Binding Motif

Accessions: 4kdp_AB (3D-footprint 20210203)
Names: TcaR transcription regulator
Organisms: Staphylococcus epidermidis, strain ATCC 12228 / FDA PCI 1200
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TcaR-ssDNA complex crystal structure reveals the novel ssDNA binding mechanism of the MarR family proteins
Length: 11
Consensus: CGCAGcGnnnA
Weblogo:
PSSM: P0 A C G T
01 4 81 4 7 C
02 0 0 96 0 G
03 9 67 11 9 C
04 96 0 0 0 A
05 9 11 67 9 G
06 19 38 19 20 c
07 0 0 96 0 G
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 88 4 2 2 A
Binding TFs: 4kdp_B / 4kdp_A (MarR family, Winged helix DNA-binding domain, MarR family, Bacterial regulatory protein, arsR family)
Binding Sites: 4kdp_H
Publications: Chang Y.M, Ho C.H, Chen C.K, Maestre-Reyna M, Chang-Chien M.W, Wang A.H. TcaR-ssDNA complex crystal structure reveals new DNA binding mechanism of the MarR family proteins. Nucleic acids research 42:5314-21 (2014). [Pubmed]

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