DNA Binding Motif

Accessions: 3m9e_E (3D-footprint 20231221)
Names: Thyroid hormone receptor beta
Organisms: Rattus norvegicus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Thyroid hormone beta DNA binding domain homodimer with inverted palindrome TRE
Length: 5
Consensus: tGaCC
Weblogo:
PSSM: P0 A C G T
01 13 13 13 57 t
02 0 0 96 0 G
03 54 16 13 13 a
04 0 96 0 0 C
05 0 96 0 0 C
Binding TFs: 3m9e_E (Zinc finger, C4 type (two domains))
Binding Sites: 3m9e_G / 3m9e_H
Publications: Chen Y, Young M.A. Structure of a thyroid hormone receptor DNA-binding domain homodimer bound to an inverted palindrome DNA response element. Molecular endocrinology (Baltimore, Md.) 24:1650-64 (2010). [Pubmed]

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