DNA Binding Motif

Accessions: 5e3o_B (3D-footprint 20231221)
Names: DNA-binding protein Fis
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Fis bound to 27bp DNA F32 (AAATTTGGAGGAATTTTCTCCAAATTT)
Length: 6
Consensus: CCnCCA
Weblogo:
PSSM: P0 A C G T
01 11 67 9 9 C
02 11 67 9 9 C
03 24 24 24 24 n
04 9 67 11 9 C
05 0 96 0 0 C
06 96 0 0 0 A
Binding TFs: 5e3o_B (Bacterial regulatory protein, Fis family)
Binding Sites: 5e3o_C
5e3o_D
Publications: Hancock SP, Stella S, Cascio D, Johnson RC. DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis. PLoS One : (2016). [Pubmed]

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