DNA Binding Motif

						

			
Accessions: MA0486.1 (JASPAR 2024)

			
Names: HSF1
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 15
Consensus: yTTCyrGAAsbTTCy
Weblogo: 
PSSM: P0      A      C      G      T
01     25     82     56     62      y
02      8     26     12    179      T
03      3     11      8    203      T
04      1    222      2      0      C
05      4     71      6    144      y
06    128      7     89      1      r
07      0      0    225      0      G
08    187     24      3     11      A
09    186      6     15     18      A
10     44     63     73     45      s
11     39     62     67     57      b
12     13     16      9    187      T
13      8      5      4    208      T
14      0    218      2      5      C
15      6     88     18    113      y
Type: Heterodimer
Binding TFs: Q00613 (HSF-type DNA-binding, Vertebrate heat shock transcription factor)
Q00613
Binding Sites: MA0486.1.1
MA0486.1.10
MA0486.1.11
MA0486.1.12
MA0486.1.13
MA0486.1.14
MA0486.1.15
MA0486.1.16
MA0486.1.17
MA0486.1.18
MA0486.1.19
MA0486.1.2
MA0486.1.20
MA0486.1.3
MA0486.1.4
MA0486.1.5
MA0486.1.6
MA0486.1.7
MA0486.1.8
MA0486.1.9
			
Publications: Reddy T.E, DeLisi C, Shakhnovich B.E. Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites. PLoS computational biology 3:e90 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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