DNA Binding Motif

Accessions: 2zhg_A (3D-footprint 20231221)
Names: Redox-sensitive transcriptional activator soxR
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of SoxR in complex with DNA
Length: 4
Consensus: aCtt
Weblogo:
PSSM: P0 A C G T
01 52 14 14 16 a
02 0 96 0 0 C
03 19 19 20 38 t
04 19 20 19 38 t
Binding TFs: 2zhg_A (MerR family regulatory protein, MerR, DNA binding, MerR HTH family regulatory protein)
Binding Sites: 2zhg_B
Publications: Watanabe S, Kita A, Kobayashi K, Miki K. Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA. Proceedings of the National Academy of Sciences of the United States of America 105:4121-6 (2008). [Pubmed]

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