DNA Binding Motif

Accessions: 4rod_AB (3D-footprint 20231221)
Names: TATA-box-binding protein
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Human TFIIB-related factor 2 (Brf2) and TBP bound to TRNAU1 promoter
Length: 16
Consensus: GAnnCTTATATAnCTG
Weblogo:
PSSM: P0 A C G T
01 0 5 91 0 G
02 87 4 1 4 A
03 24 24 24 24 n
04 24 24 24 24 n
05 0 96 0 0 C
06 0 0 0 96 T
07 4 1 0 91 T
08 91 0 0 5 A
09 0 0 0 96 T
10 91 0 4 1 A
11 0 0 0 96 T
12 80 4 4 8 A
13 24 24 24 24 n
14 14 66 8 8 C
15 4 4 9 79 T
16 4 14 70 8 G
Binding TFs: 4rod_B (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 4rod_N
4rod_T
Publications: Gouge J, Satia K, Guthertz N, Widya M, Thompson AJ, Cousin P, Dergai O, Hernandez N, Vannini A. Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2. Cell 163:1375-87 (2015). [Pubmed]

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