DNA Binding Motif

Accessions: 5d5x_E (3D-footprint 20231221)
Names: Putative transcription factor
Organisms: Chaetomium thermophilum, strain DSM 1495 / CBS 144.50 / IMI 039719
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Chaetomium thermophilum Skn7 with SSRE DNA
Length: 6
Consensus: TGGCTG
Weblogo:
PSSM: P0 A C G T
01 9 9 9 69 T
02 9 11 67 9 G
03 0 0 96 0 G
04 0 96 0 0 C
05 0 0 0 96 T
06 9 9 69 9 G
Binding TFs: 5d5x_E (HSF-type DNA-binding)
Binding Sites: 5d5x_A
5d5x_D
Publications: Neudegger T, Verghese J, Hayer-Hartl M, Hartl FU, Bracher A. Structure of human heat-shock transcription factor 1 in complex with DNA. Nat Struct Mol Biol 23:140-6 (2016). [Pubmed]

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