DNA Binding Motif

Accessions: ArgR (RegulonDB 7.5)
Names: ArgR
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 18
Consensus: hwArTGAATwwThATkCA
Weblogo:
PSSM: P0 A C G T
01 8 7 3 9 h
02 12 4 2 9 w
03 21 1 1 4 A
04 9 6 8 4 r
05 4 2 2 19 T
06 2 3 21 1 G
07 21 3 2 1 A
08 21 3 2 1 A
09 3 1 0 23 T
10 10 0 1 16 w
11 8 2 0 17 w
12 5 0 1 21 T
13 7 7 0 13 h
14 25 0 1 1 A
15 4 3 0 20 T
16 2 3 15 7 k
17 2 24 0 1 C
18 25 0 2 0 A
Binding TFs: ECK120004542 (Arginine repressor, DNA binding domain, Arginine repressor, C-terminal domain)
Binding Sites: ECK120011673
ECK120011675
ECK120011677
ECK120011679
ECK120012260
ECK120012263
ECK120012266
ECK120012608
ECK120012611
ECK120012614
ECK120012616
ECK120012618
ECK120012620
ECK120012622
ECK120012624
ECK120012652
ECK120012654
ECK120020708
ECK120020769
ECK120029619
ECK120029620
ECK120032395
ECK120032397
ECK120033152
ECK120033342
ECK120033343
ECK120033344
Publications: Kiupakis AK., Reitzer L. ArgR-independent induction and ArgR-dependent superinduction of the astCADBE operon in Escherichia coli. J Bacteriol. 184(11):2940-50 (2002). [Pubmed]

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