DNA Binding Motif

Accessions: 1k61_B (3D-footprint 20231221)
Names: Mating-type protein alpha-2
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: MATALPHA2 HOMEODOMAIN BOUND TO DNA
Length: 14
Consensus: TGTAntTnnnnnrC
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 0 0 96 0 G
03 0 0 0 96 T
04 78 0 18 0 A
05 24 24 24 24 n
06 17 10 8 61 t
07 0 0 17 79 T
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 24 24 24 24 n
12 24 24 24 24 n
13 26 10 52 8 r
14 0 96 0 0 C
Binding TFs: 1k61_B (Homeobox domain, Homeobox KN domain)
Binding Sites: 1k61_E
1k61_F
Publications: Aishima J, Gitti R.K, Noah J.E, Gan H.H, Schlick T, Wolberger C. A Hoogsteen base pair embedded in undistorted B-DNA. Nucleic acids research 30:5244-52 (2002). [Pubmed]

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