DNA Binding Motif

Accessions: M1131_1.02 (CISBP 1.02)
Names: HMRA2, T100209_1.02
Organisms: Saccharomyces cerevisiae
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 8
Consensus: CrTGTAAw
01 0.0195 0.7765 0.0098 0.1942 C
02 0.5563 0.0001 0.4135 0.0301 r
03 0.0066 0.0395 0.0001 0.9538 T
04 0.0131 0.0001 0.9867 0.0001 G
05 0.0001 0.0066 0.0001 0.9933 T
06 0.8409 0.0067 0.0067 0.1457 A
07 0.7316 0.0570 0.0488 0.1626 A
08 0.5167 0.0113 0.0226 0.4493 w
Binding TFs: T100209_1.02 (Homeobox domain, Homeobox KN domain)
Publications: Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed]


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.