DNA Binding Motif

						

			
Accessions: 2hap_D (3D-footprint 20231221)

			
Names: PROTEIN (HEME ACTIVATOR PROTEIN)
Organisms: Saccharomyces cerevisiae
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: STRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN HAVE DIRECT ALLOSTERIC EFFECTS ON TRANSCRIPTIONAL ACTIVATION
Length: 9
Consensus: ATAAnaGCG
Weblogo: 
PSSM: P0      A      C      G      T
01     82      7      0      7      A
02      0      0      0     96      T
03     96      0      0      0      A
04     66      7     14      9      A
05     24     24     24     24      n
06     59     14      9     14      a
07      0      0     96      0      G
08      1     88      7      0      C
09      1      7     88      0      G
Binding TFs: 2hap_D (Fungal Zn(2)-Cys(6) binuclear cluster domain)
Binding Sites: 2hap_A
2hap_B
			
Publications: King D.A, Zhang L, Guarente L, Marmorstein R. Structure of HAP1-18-DNA implicates direct allosteric effect of protein-DNA interactions on transcriptional activation. Nature structural biology 6:22-7 (1999). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.