DNA Binding Motif

						

			
Accessions: 1a6y_AB (3D-footprint 20231221)

			
Names: ORPHAN NUCLEAR RECEPTOR NR1D1
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX
Length: 14
Consensus: TGaCCnnnTGACCt
Weblogo: 
PSSM: P0      A      C      G      T
01      6     12      8     70      T
02      0      0     96      0      G
03     60     12     12     12      a
04      0     96      0      0      C
05      0     96      0      0      C
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     12      6      0     78      T
10      0      0     96      0      G
11     96      0      0      0      A
12      0     96      0      0      C
13      0     96      0      0      C
14      6     19      6     65      t
Type: Heterodimer
Binding TFs: 1a6y_A (Zinc finger, C4 type (two domains))
1a6y_B (Zinc finger, C4 type (two domains))
Binding Sites: 1a6y_D
1a6y_C
			
Publications: Zhao Q, Khorasanizadeh S, Miyoshi Y, Lazar M.A, Rastinejad F. Structural elements of an orphan nuclear receptor-DNA complex. Molecular cell 1:849-61 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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