DNA Binding Motif

						

			
Accessions: 5d8c_AB (3D-footprint 20231221)

			
Names: MerR family regulator protein
Organisms: Haemophilus influenzae, strain ATCC 51907 / DSM 11121 / KW20 / Rd
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of HiNmlR, a MerR family regulator lacking the sensor domain, bound to promoter DNA
Length: 12
Consensus: AGAGnnnnCTCT
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02      4      6     82      4      G
03     82      4      4      6      A
04      6      4     82      4      G
05     24     24     24     24      n
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09      4     82      6      4      C
10      6      4      4     82      T
11      4     82      6      4      C
12      4      4      6     82      T
Type: Heterodimer
Binding TFs: 5d8c_A (MerR family regulatory protein, MerR, DNA binding, MerR HTH family regulatory protein)
5d8c_B (MerR family regulatory protein, MerR, DNA binding, MerR HTH family regulatory protein)
Binding Sites: 5d8c_C
5d8c_D
			
Publications: Couñago RM, Chen NH, Chang CW, Djoko KY, McEwan AG, Kobe B. Structural basis of thiol-based regulation of formaldehyde detoxification in H. influenzae by a MerR regulator with no sensor region 44:6981-93 (Nucleic). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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