DNA Binding Motif

Accessions: M0690_1.02 (CISBP 1.02)
Names: Etv1, T078267_1.02
Organisms: Mus musculus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 10
Consensus: vrcCGGAwry
Weblogo:
PSSM: P0 A C G T
01 0.2595 0.2518 0.2783 0.2103 v
02 0.4100 0.1406 0.2614 0.1879 r
03 0.1354 0.5828 0.2060 0.0758 c
04 0.1640 0.7726 0.0355 0.0279 C
05 0.0399 0.0379 0.8763 0.0459 G
06 0.0475 0.0128 0.9170 0.0227 G
07 0.9107 0.0168 0.0527 0.0198 A
08 0.5801 0.0842 0.0418 0.2939 w
09 0.2790 0.1531 0.4983 0.0695 r
10 0.1476 0.2827 0.1220 0.4478 y
Binding TFs: T078267_1.02 (Ets-domain, PEA3 subfamily ETS-domain transcription factor N terminal domain)
Publications: Wei G-H, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, Ukkonen E, Hughes TR, Bulyk ML, Taipale J. Genome-wide analysis of ETS family DNA-binding in vitro and in vivo. The EMBO Journal. Epub 2010 Jun 1. doi:10.1038/emboj.2010.106 [Pubmed]

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