DNA Binding Motif

Accessions: M1308_1.02 (CISBP 1.02)
Names: PK14402.1, T116478_1.02
Organisms: Cannabis sativa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 11
Consensus: rtaGATTCcgy
Weblogo:
PSSM: P0 A C G T
01 0.3002 0.1964 0.3070 0.1964 r
02 0.2355 0.1250 0.2197 0.4198 t
03 0.5754 0.0471 0.1419 0.2356 a
04 0.0002 0.0002 0.8889 0.1107 G
05 0.9995 0.0002 0.0002 0.0002 A
06 0.0002 0.0002 0.0002 0.9995 T
07 0.0002 0.0949 0.0002 0.9047 T
08 0.0002 0.9995 0.0002 0.0002 C
09 0.0538 0.6469 0.2456 0.0538 c
10 0.1252 0.2185 0.4352 0.2211 g
11 0.2031 0.2964 0.2031 0.2975 y
Binding TFs: T116478_1.02 (Myb-like DNA-binding domain)
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

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