DNA Binding Motif

						

			
Accessions: MA1246.1 (JASPAR 2024), M0123 (AthalianaCistrome v4_May2016)

			
Names: LEP, LEP.DAP, T20893;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 21
Consensus: dcCkCCGCCGycrchrccgcc
Weblogo: 
PSSM: P0      A      C      G      T
01    125     74    128    163      d
02     40    250     78    122      c
03     36    413      9     32      C
04     69     23    226    172      k
05      4    398     52     36      C
06      2    488      0      0      C
07     26      0    456      8      G
08      0    480      0     10      C
09      0    489      0      1      C
10     23      0    460      7      G
11     12    301     20    157      y
12     75    303     22     90      c
13    206     27    146    111      r
14    119    232     44     95      c
15    133    189     41    127      h
16    125     56    187    122      r
17     61    252     56    121      c
18    108    254     48     80      c
19     72     80    222    116      g
20     88    240     51    111      c
21     68    278     44    100      c
Type: Heterodimer
Binding TFs: Q9M644 / T20893 (AP2 domain)
Q9M644
Binding Sites: MA1246.1.15
MA1246.1.1
MA1246.1.10
MA1246.1.11
MA1246.1.12
MA1246.1.13
MA1246.1.14
MA1246.1.16
MA1246.1.17
MA1246.1.18
MA1246.1.19
MA1246.1.2
MA1246.1.20
MA1246.1.3
MA1246.1.4
MA1246.1.5
MA1246.1.6
MA1246.1.7
MA1246.1.8
MA1246.1.9
			
Publications: Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.