DNA Binding Motif

Accessions: 2jpa_A (3D-footprint 2022-04-03)
Names: Wilms tumor 1
Organisms: Homo sapiens
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of the Wilms Tumor Suppressor Protein Zinc Finger Domain Bound to DNA
Length: 13
Consensus: GCGGGGGCGTnTG
Weblogo:
PSSM: P0 A C G T
01 0 0 96 0 G
02 0 96 0 0 C
03 0 0 96 0 G
04 0 0 96 0 G
05 7 7 73 9 G
06 0 0 96 0 G
07 0 0 96 0 G
08 0 96 0 0 C
09 0 0 96 0 G
10 7 9 7 73 T
11 24 24 24 24 n
12 7 7 7 75 T
13 7 7 73 9 G
Binding TFs: 2jpa_A (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 2jpa_B
2jpa_C
Publications: Stoll R, Lee B.M, Debler E.W, Laity J.H, Wilson I.A, Dyson H.J, Wright P.E. Structure of the Wilms tumor suppressor protein zinc finger domain bound to DNA. Journal of molecular biology 372:1227-45 (2007). [Pubmed]

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