DNA Binding Motif

Accessions: CsgD (RegulonDB 7.5)
Names: CsgD, CsgD DNA-binding transcriptional dual regulator
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 11
Consensus: mgrrtrarhtA
Weblogo:
PSSM: P0 A C G T
01 6 10 1 4 m
02 5 4 8 4 g
03 12 0 9 0 r
04 9 0 12 0 r
05 3 2 3 13 t
06 7 0 14 0 r
07 13 1 3 4 a
08 8 2 10 1 r
09 6 6 0 9 h
10 2 4 2 13 t
11 21 0 0 0 A
Binding TFs: ECK120007601 (Bacterial regulatory proteins, luxR family)
Binding Sites: ECK120026340
ECK120026342
ECK120026344
ECK120026348
ECK125135159
ECK125135161
ECK125135163
ECK125135165
ECK125135171
ECK125135173
ECK125135175
ECK125135177
ECK125135179
ECK125135181
ECK125135183
ECK125135185
ECK125135187
ECK125135189
ECK125135214
ECK125135216
ECK125135252

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