DNA Binding Motif

Accessions: 1h88_ABC (3D-footprint 20231221)
Names: CCAAT/ENHANCER BINDING PROTEIN BETA
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
Length: 20
Consensus: GTGGCGcAAnnnnTAACGGA
Weblogo:
PSSM: P0 A C G T
01 15 5 71 5 G
02 0 0 0 96 T
03 0 0 96 0 G
04 0 0 96 0 G
05 0 96 0 0 C
06 0 0 96 0 G
07 20 60 6 10 c
08 96 0 0 0 A
09 96 0 0 0 A
10 24 24 24 24 n
11 24 24 24 24 n
12 24 24 24 24 n
13 24 24 24 24 n
14 10 6 5 75 T
15 96 0 0 0 A
16 96 0 0 0 A
17 0 96 0 0 C
18 10 0 81 5 G
19 0 5 90 1 G
20 75 6 10 5 A
Type: Heterodimer
Binding TFs: 1h88_A (bZIP transcription factor, Basic region leucine zipper)
1h88_B (bZIP transcription factor, Basic region leucine zipper)
Binding Sites: 1h88_D
1h88_E
Publications: Tahirov T.H, Sato K, Ichikawa-Iwata E, Sasaki M, Inoue-Bungo T, Shiina M, Kimura K, Takata S, Fujikawa A, Morii H, Kumasaka T, Yamamoto M, Ishii S, Ogata K. Mechanism of c-Myb-C/EBP beta cooperation from separated sites on a promoter. Cell 108:57-70 (2002). [Pubmed]

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