DNA Binding Motif
| Accessions: | BkdR (DBTBS 1.0) |
| Names: | BkdR |
| Organisms: | Bacillus subtilis |
| Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
| Length: | 14 |
| Consensus: | TGCArATkATkGCr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0 0 0 1 T 02 0 0 1 0 G 03 0 1 0 0 C 04 1 0 0 0 A 05 0.63 0 0.37 0 r 06 1 0 0 0 A 07 0 0 0 1 T 08 0 0 0.63 0.37 k 09 0.77 0 0 0.23 A 10 0.23 0 0 0.77 T 11 0 0 0.37 0.63 k 12 0 0 1 0 G 13 0 1 0 0 C 14 0.63 0 0.37 0 r |
| Binding TFs: | BkdR (ATPase family associated with various cellular activities (AAA), Sigma-54 interaction domain, PAS fold, Bacterial regulatory protein, Fis family, AAA domain (dynein-related subfamily), PAS fold, PAS domain, PAS domain, PAS domain) |
| Binding Sites: | ptb_1 ptb_2 ptb_3 |
| Publications: | Debarbouille M, Gardan R, Arnaud M, Rapoport G. Role of bkdR, a transcriptional activator of the sigL-dependent isoleucine and valine degradation pathway in Bacillus subtilis. Journal of bacteriology 181:2059-66 (1999). [Pubmed] |
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