DNA Binding Motif

Accessions: 1b8i_AB (3D-footprint 20231221)
Names: PROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV)
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX
Length: 11
Consensus: GTGATTTATGG
Weblogo:
PSSM: P0 A C G T
01 4 4 76 12 G
02 0 0 0 96 T
03 0 0 96 0 G
04 80 0 4 12 A
05 4 4 4 84 T
06 0 4 4 88 T
07 4 4 4 84 T
08 92 0 4 0 A
09 0 0 0 96 T
10 4 4 76 12 G
11 4 4 84 4 G
Type: Heterodimer
Binding TFs: 1b8i_A (Homeobox domain)
1b8i_B (Homeobox domain, Homeobox KN domain)
Binding Sites: 1b8i_C
1b8i_D
Publications: Passner J.M, Ryoo H.D, Shen L, Mann R.S, Aggarwal A.K. Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex. Nature 397:714-9 (1999). [Pubmed]

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