DNA Binding Motif

						

			
Accessions: MA0590.1 (JASPAR 2024)

			
Names: LFY
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX, SELEX-seq
Length: 19
Consensus: yATkrACCGsCGGTymATr
Weblogo: 
PSSM: P0      A      C      G      T
01     32    104     49    199      y
02    266     13     17     80      A
03     56     75     12    325      T
04     20      7    178    360      k
05    126      0    246      4      r
06    228     43      2     50      A
07     10    364      0      8      C
08      0    358      0     19      C
09     94      2    273     10      G
10     35    174    174     35      s
11     10    273      2     94      C
12     19      0    358      0      G
13      8      0    364     10      G
14     50      2     43    228      T
15      4    246      0    126      y
16    360    178      7     20      m
17    325     12     75     56      A
18     80     17     13    266      T
19    199     49    104     32      r
Type: Heterodimer
Binding TFs: Q00958 (Floricaula / Leafy protein)
Q00958
			
Publications: Moyroud E, Minguet E.G, Ott F, Yant L, Posé D, Monniaux M, Blanchet S, Bastien O, Thévenon E, Weigel D, Schmid M, Parcy F. Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factor. The Plant cell 23:1293-306 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.