DNA Binding Motif

Accessions: 1trr_AB (3D-footprint 20210203)
Names: PROTEIN (TRP REPRESSOR)
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX
Length: 14
Consensus: AncGnnntnGtACG
Weblogo:
PSSM: P0 A C G T
01 94 1 1 0 A
02 24 24 24 24 n
03 15 51 17 13 c
04 1 4 90 1 G
05 24 24 24 24 n
06 24 24 24 24 n
07 24 24 24 24 n
08 15 13 17 51 t
09 24 24 24 24 n
10 0 0 96 0 G
11 13 17 15 51 t
12 96 0 0 0 A
13 0 96 0 0 C
14 0 0 96 0 G
Binding TFs: 1trr_A / 1trr_B (Trp repressor protein)
Binding Sites: 1trr_C / 1trr_I
Publications: Lawson C.L, Carey J. Tandem binding in crystals of a trp repressor/operator half-site complex. Nature 366:178-82 (1993). [Pubmed]

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