DNA Binding Motif

Accessions: 3g6t_AB (3D-footprint 20231221)
Names: Glucocorticoid receptor
Organisms: Rattus norvegicus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: GR gamma DNA-binding domain:FKBP5 16bp complex-34
Length: 11
Consensus: GnACAnnnTGT
Weblogo:
PSSM: P0 A C G T
01 0 0 96 0 G
02 24 24 24 24 n
03 75 7 7 7 A
04 0 96 0 0 C
05 73 9 7 7 A
06 24 24 24 24 n
07 24 24 24 24 n
08 24 24 24 24 n
09 9 7 7 73 T
10 0 0 96 0 G
11 7 7 7 75 T
Type: Heterodimer
Binding TFs: 3g6t_A (Zinc finger, C4 type (two domains))
3g6t_B (Zinc finger, C4 type (two domains))
Binding Sites: 3g6t_C
3g6t_D
Publications: Meijsing S.H, Pufall M.A, So A.Y, Bates D.L, Chen L, Yamamoto K.R. DNA binding site sequence directs glucocorticoid receptor structure and activity. Science (New York, N.Y.) 324:407-10 (2009). [Pubmed]

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