DNA Binding Motif

						

			
Accessions: MA1054.1 (JASPAR 2024)

			
Names: ARALYDRAFT_897773
Organisms: Arabidopsis lyrata subsp. lyrata
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 10
Consensus: ykGGGACCAC
Weblogo: 
PSSM: P0      A      C      G      T
01     92    278    167    463      y
02     27     79    491    402      k
03     36      4    877     83      G
04     17      7    957     19      G
05     40    125    826      9      G
06    756    215      7     22      A
07      2    949     47      2      C
08      1    995      2      1      C
09    862      2    132      4      A
10     20    907      6     67      C
Type: Heterodimer
Binding TFs: D7L3Y2 (TCP family transcription factor)
D7L3Y2
			
Publications: Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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