DNA Binding Motif

						

			
Accessions: MA1146.1 (JASPAR 2024)

			
Names: NR1A4::RXRA, NR1H4::RXRA
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SMiLE-seq
Length: 15
Consensus: grGkTCAtTGACCyy
Weblogo: 
PSSM: P0      A      C      G      T
01    223    172    451    154      g
02    653     55    280     11      r
03     29     15    937     19      G
04     22      9    646    324      k
05     24     49    101    826      T
06     11    875     13    100      C
07    720     13    249     17      A
08    144    121     75    660      t
09     23     92     48    838      T
10    108    102    753     37      G
11    763    112     78     48      A
12    134    773      9     83      C
13    113    798     38     51      C
14     25    383     71    521      y
15     95    313    212    380      y
Type: Heterodimer
Binding TFs: Q96RI1 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
P19793 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Nuclear/hormone receptor activator site AF-1)
P19793
Q96RI1
			
Publications: Laffitte B. A., Kast H. R., Nguyen C. M., Zavacki A. M., Moore D. D., Edwards P. A. Identification of the DNA binding specificity and potential target genes for the farnesoid X-activated receptor.. J. Biol. Chem. 275:10638-10647 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.