DNA Binding Motif

Accessions: M3029_1.02 (CISBP 1.02)
Names: HMD1_CHICK, T093717_1.02
Organisms: Gallus gallus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 7
Consensus: yatAAAk
01 0.0526 0.4737 0.1579 0.3158 y
02 0.5263 0.1053 0.1579 0.2105 a
03 0.0526 0.2105 0.1579 0.5789 t
04 0.6842 0.1053 0.0000 0.2105 A
05 0.9474 0.0000 0.0000 0.0526 A
06 0.7368 0.0526 0.0000 0.2105 A
07 0.1053 0.1053 0.3158 0.4737 k
Binding TFs: T093717_1.02 (Homeobox domain)
Publications: Matys V, Kel-Margoulis O.V, Fricke E, Liebich I, Land S, Barre-Dirrie A, Reuter I, Chekmenev D, Krull M, Hornischer K, Voss N, Stegmaier P, Lewicki-Potapov B, Saxel H, Kel A.E, Wingender E. TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic acids research 34:D108-10 (2006). [Pubmed]


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