DNA Binding Motif

Accessions: 2or1_L (3D-footprint 20231221)
Names: 434 REPRESSOR
Organisms: Phage 434
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTION
Length: 9
Consensus: TACAAnAnA
Weblogo:
PSSM: P0 A C G T
01 0 8 8 80 T
02 96 0 0 0 A
03 0 96 0 0 C
04 96 0 0 0 A
05 72 8 8 8 A
06 24 24 24 24 n
07 72 8 8 8 A
08 24 24 24 24 n
09 72 8 8 8 A
Binding TFs: 2or1_L (Helix-turn-helix, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: 2or1_A
2or1_B
Publications: Aggarwal A.K, Rodgers D.W, Drottar M, Ptashne M, Harrison S.C. Recognition of a DNA operator by the repressor of phage 434: a view at high resolution. Science (New York, N.Y.) 242:899-907 (1988). [Pubmed]

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