DNA Binding Motif

Accessions: 1gd2_EF (3D-footprint 20231221)
Names: TRANSCRIPTION FACTOR PAP1
Organisms: Schizosaccharomyces pombe, Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA
Length: 12
Consensus: GGTTACGTAACC
Weblogo:
PSSM: P0 A C G T
01 6 6 78 6 G
02 6 6 78 6 G
03 0 0 0 96 T
04 0 0 0 96 T
05 78 6 6 6 A
06 0 96 0 0 C
07 0 0 96 0 G
08 6 6 6 78 T
09 96 0 0 0 A
10 96 0 0 0 A
11 0 96 0 0 C
12 6 78 6 6 C
Type: Heterodimer
Binding TFs: 1gd2_E (bZIP transcription factor)
1gd2_F (bZIP transcription factor)
Binding Sites: 1gd2_A / 1gd2_B
Publications: Fujii Y, Shimizu T, Toda T, Yanagida M, Hakoshima T. Structural basis for the diversity of DNA recognition by bZIP transcription factors. Nature structural biology 7:889-93 (2000). [Pubmed]

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